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GRanges-class function - RDocumentation
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pctOverlap: calculate percent overlap between two GRanges …
WebNov 8, 2024 · Details. In the ballgown context, tx1 and tx2 are two transcripts, each represented by GRanges objects whose ranges represent the exons comprising the transcripts. The percent overlap is the number of nucleotides falling within both transcripts divided by the number of nucleotides falling within either transcript. WebNov 8, 2024 · pctOverlap: calculate percent overlap between two GRanges objects; pData: extract phenotype data from a ballgown object; pData-replace: Replacement method for pData slot in ballgown objects; plotLatentTranscripts: cluster assembled transcripts and plot the results; plotMeans: visualize transcript abundance by group WebJun 9, 2016 · Using do.call and c works, but you have to help R find the correct method method of c to use.. do.call(getMethod(c, "GenomicRanges"), grl) ## GRanges object with 8 ... greensboro nc non profits